| 1986 | Dupré: Symphony in G minor / Rheinberger: Organ Concerto no. 1 in F | Dupré, Rheinberger; Royal Philharmonic Orchestra, Jahja Ling, Michael Murray | | 1 |
| 1989 | Great European Organs, No. 13: Graham Barber Plays the Schulze Organ at St. Bartholomew’s Church, Armley | Rheinberger; Graham Barber | | 2 |
| 1989 | Missa Es-Dur, op. 109 / Hymne nach dem 84. Psalm, op. 35 / Sabat Mater, op. 138 / Fünf Hymnen, op. 140 | Josef Gabriel Rheinberger; Kammerchor Stuttgart, Frieder Bernius | | 1 |
| 1991 | Complete Chamber Music 5 | Josef Gabriel Rheinberger | | 1 |
| 1991 | Festliches Konzert in der Abteikirche Amorbach für Orgel, drei Trompeten und Pauken | Bach, Mozart, Rheinberger, Fauré, Delibes; Klemens Schnorr, Jean François Michel | | 1 |
| 1992 | 6 Stücke op. 150 / Suite op. 149 | Rheinberger; Sebestyen, Juffinger, Ostertag, R S O Berlin, Hartmut Haenchen | | 1 |
| 1992 | Rheinberger Organ Sonatas, Volume III: The Later Sonatas | Josef Rheinberger; Bruce Stevens | | 1 |
| 1992 | Sämtliche Klaviertrios | Joseph Rheinberger; Trio Parnassus | | 2 |
| 1997 | Der Stern von Bethlehem | Josef Gabriel Rheinberger | | 1 |
| 1997 | Sacred Choral Music (including Mass in E-flat / Requiem in D minor) | Rheinberger; Choir of Gonville & Caius College, Cambridge, Geoffrey Webber | | 1 |
| 1998 | Musica sacra IV: Missae et Cantiones | Josef Gabriel Rheinberger; Frankfurter Kantorei, Edgar Krapp, Wolfgang Schäfer | | 1 |
| 1999 | Works for Organ, Volume 1: Sonatas nos. 1-4 | Josef Gabriel Rheinberger; Wolfgang Rübsam | | 1 |
| 1999 | Advent-Motetten / Der Stern von Bethlehem | Josef Gabriel Rheinberger; Dilek Gecer, Michael Junge, Universitätschor Dresden, Vogtland Philharmonie Greiz/Reichenbach, Stefan Fraas | | 1 |
| 2000 | Works for Organ, Volume 2: Sonatas nos. 5-7 | Josef Gabriel Rheinberger; Wolfgang Rübsam | | 1 |
| 2001 | Works for Organ, Volume 3: Sonatas nos. 8 & 9 / Ten Trios, op. 49, nos. 1-10 | Josef Gabriel Rheinberger; Wolfgang Rübsam | | 1 |
| 2001 | Sgambati and Rheinberger: Piano Concertos | Jorge Bolet, Giovanni Sgambati / Adrian Ruiz, Josef Gabriel Rheinberger | | 1 |
| 2001 | Works for Organ, Volume 4: Sonatas nos. 10 & 11 / Five Trios, op. 189, nos. 1-5 | Josef Gabriel Rheinberger; Wolfgang Rübsam | | 1 |
| 2002 | Josef Rheinberger Concertos for Organ and Orchestra Nos. 1 & 2 | Josef Rheinberger; Ulrik Spang-Hanssen | | 1 |
| 2002 | Messen der Romantiek | Josef Gabriel Rheinberger, Charles Gounod; Banter Kantorei Wilhelmshaven, Ingrid Sturm | | 1 |
| 2003 | Musica sacra VII: Christus factus est | Josef Gabriel Rheinberger; Vocalensemble Rastatt, Holger Speck | | 1 |
| 2003 | Organ Works, Volume 5: Sonatas nos. 12 & 13 / Seven Trios, op. 189, nos. 6-12 | Josef Gabriel Rheinberger; Wolfgang Rübsam | | 1 |
| 2005 | Organ Concerto no. 1 in F major / Organ Concerto no. 2 in G minor | Joseph Rheinberger; Paul Skevington, The Amadeus Orchestra, Timothy Rowe | | 1 |
| 2007 | Sacred Choral Works | Rheinberger; Phoenix Bach Choir, Kansas City Chorale, Charles Bruffy | | 1 |
| 2008 | Organ Works, Volume 6: Sonatas nos. 14-16 | Josef Gabriel Rheinberger; Wolfgang Rübsam | | 1 |
| 2008 | Organ Works, Volume 7: Sonatas nos. 17 & 18 / Monologues, op. 162, nos. 1-6 | Josef Gabriel Rheinberger; Wolfgang Rübsam | | 1 |
| 2008 | Bruckner: Messe in e / Libera me / Rheinberger : Requiem in Es | Anton Bruckner, Josef Gabriel Rheinberger; KammerChor Saarbrücken, Kammerphilharmonie Mannheim, Georg Grün | | 1 |
| 2009 | Organ Works, Volume 8: Sonatas nos. 19 & 20 / Prelude and Fugue in C minor, JWV 16 | Josef Gabriel Rheinberger; Wolfgang Rübsam | | 1 |
| 2009 | Goldberg-Variationen: Fassung für zwei Klaviere von Joseph Rheinberger und Max Reger | Bach;Rheinberger, Reger; Tal & Groethuysen | | 1 |
| 2010 | Rheinberger: Cantus Missae / Bruckner: Messe E-Moll | Josef Gabriel Rheinberger, Anton Bruckner; Camerata Vocale Freiburg, Winfried Toll | | 1 |
| 2011 | Klavierwerke | Josef Gabriel Rheinberger: Jürg Häusermann | | 1 |
| 2013 | Goldberg Variations for Two Pianos | Bach / Rheinberger, Reger; Nina Schumann, Luis Magalhães | | 1 |
| 2018 | The Romantic Piano Concerto, Volume 76: Rheinberger: Piano Concerto in A-flat major, op. 94 / Scholz: Piano Concerto in B major, op. 57 / Capriccio, op. 35 | Rheinberger, Scholz; Simon Callaghan, BBC Scottish Symphony Orchestra, Ben Gernon | | 2 |
| 2019 | Sinfonisches Tongemälde in D-moll, op. 10 "Wallenstein" | J. G. Rheinberger; Sinfonieorchester Liechtenstein, Florian Krumpöck | | 1 |
| 2021 | Goldberg Variations, BWV 988 (version for 2 pianos) | Johann Sebastian Bach, Joseph Rheinberger, Max Reger; Duo Monti-Bianco | | 2 |
| 2022 | Chamber Music With Organ | Rheinberger; Michela Bergamasco, Cristina Monticoli, Marco Dalsass, Manuel Tomadin | | 1 |
| 2022 | Romantic Music for Cello and Organ | Wermann, Rheinberger, Brahms, Widor, Shmitov, Dupré; Alexander Zagorinsky, Alexey Shmitov | | 1 |
| 2023 | Choral & Organ Music | Rheinberger; Coro Polifonico di Ruda, Fabiana Noro, Manuel Tomadin | | 1 |
| 2023 | Rheinberger & Mendelssohn: Choral Works | Josef Gabriel Rheinberger, Felix Mendelssohn; Netherlands Radio Choir conducted by Benjamin Goodson | | 1 |
| — | Der Stern von Bethlehem: Weihnachtskantate für Soli, Chor und Orchester | Josef Gabriel Rheinberger; Isolde Siebert, Guido Baehr, Nürnberger Symphoniker, Limburger Domsingknaben, Klaus Knubben | | 1 |
| — | Die Orgel im Dom zu Trier | Rheinberger, Karg-Elert, Fackler, Dupré, Messiaen, Guilmant; Wolfgang Oehms | | 1 |
| — | Goldberg-Variationen | Bach / Rheinberger, Reger; Adelheid Lechler, Ulrich Eisenlohr | | 1 |
| — | Kammermusik | Josef Rheinberger | | 1 |
| — | Konzertante Musik für Oboe & Orgel | Bach, Telemann, Rheinberger, Saint‐Saëns; Elisabeth Laage, Ulfert Smidt | | 1 |
