| 1975 | Las Ensaladas | Flecha; Huelgas Ensemble, Paul Van Nevel | | 1 |
| 1979 | Ars moriendi | Huelgas Ensemble, Paul Van Nevel | | 1 |
| 1982 | La Favola di Orfeo | Dall’Aquilano, Cara, Tromboncino, Pesenti; Huelgas Ensemble, Paul Van Nevel | | 2 |
| 1982 | Œuvre intégrale | Johannes Ciconia; Paul Van Nevel, Huelgas Ensemble | | 2 |
| 1989 | O Cieco Mondo | Huelgas Ensemble, Paul Van Nevel | | 3 |
| 1990 | Cypriot Advent Antiphons. Anonymous C. 1390 | Huelgas Ensemble, Paul Van Nevel | | 1 |
| 1990 | La Dissection d’un Homme armé: Six Masses After a Burgundian Song | Huelgas Ensemble, Paul Van Nevel | | 2 |
| 1990 | Passio Domini Nostri Jesu Christi secundum Joannem | Cipriano de Rore; Huelgas Ensemble, Paul Van Nevel | | 3 |
| 1991 | Missa "Et ecce terrae motus" a 12 voci / Sequentia "Dies irae" | Antoine Brumel; Huelgas Ensemble, Paul Van Nevel | | 6 |
| 1991 | In Morte di Madonna Laura: Madrigal Cycle After Texts of Petrarca | Huelgas Ensemble, Paul Van Nevel | | 2 |
| 1991 | Las Ensaladas: Burlesques of the Spanish Renaissance | Mateo Flecha el Viejo; Huelgas Ensemble, Paul Van Nevel | | 2 |
| 1992 | Magnificat / Aus tiefer Not / Der Tag vertreibt / Venite Exultemus / Maria Magdalena / Peccave Fateor / Der CXVI. Psalm Davids | Praetorius; Huelgas Ensemble, Paul Van Nevel | | 3 |
| 1992 | Febus Avant! Music at the Court of Gaston Febus (1331-1391) | Huelgas Ensemble, Paul Van Nevel | | 2 |
| 1992 | Italia Mia: Musical Imagination of the Renaissance | Huelgas Ensemble, Paul Van Nevel | | 2 |
| 1992 | Music From the Court of Charles V | Nicolas Gombert; Huelgas Ensemble, Paul Van Nevel | | 2 |
| 1993 | NPR Milestones of the Millennium: The Renaissance in Music | Capella Antiqua München, Huelgas Ensemble, Paul Van Nevel & Lutz Kirchhof | | 2 |
| 1993 | Codex Las Huelgas: Music from 13th Century Spain | Huelgas Ensemble, Paul Van Nevel | | 1 |
| 1993 | In Musica Vivarte | Huelgas Ensemble, Paul Van Nevel | | 1 |
| 1993 | Lagrime di San Pietro | Orlando di Lasso; Huelgas Ensemble, Paul Van Nevel | | 2 |
| 1993 | Vesper Psalms and Lamentations | João Lourenço Rebelo; Huelgas Ensemble, Paul Van Nevel | | 2 |
| 1994 | Canções, vilancicos e motetes portugueses | Huelgas Ensemble, Paul Van Nevel | | 2 |
| 1994 | Magnificat / Mass Parts / Motets / Madrigals | Costanzo Festa; Huelgas Ensemble, Paul Van Nevel | | 2 |
| 1994 | Music from the Court of King Janus at Nicosia (1374-1432) | Huelgas Ensemble, Paul Van Nevel | | 2 |
| 1994 | Opus Musicum / Missa super “Sancta Maria” | Jacobus Gallus; Huelgas Ensemble, Paul Van Nevel | | 2 |
| 1994 | Ou Lit de Pleurs | Paul Van Nevel | | 1 |
| 1995 | Musica Mystica II: Authentische Klänge aus Mittelalter und Renaissance | Huelgas Ensemble, Paul Van Nevel | | 1 |
| 1995 | Utopia Triumphans | Huelgas Ensemble, Paul Van Nevel | | 3 |
| 1996 | Tears of Lisbon | Huelgas Ensemble, Paul Van Nevel, Beatriz da Conceição, António Rocha | | 1 |
| 1996 | Le Printans | Claude LeJeune; Huelgas Ensemble, Paul Van Nevel | | 2 |
| 1996 | Missa “L’homme armé” / Chansons / Motets | Matthaeus Pipelare; Huelgas Ensemble, Paul Van Nevel | | 2 |
| 1997 | Missa Veni Sancte Spiritus / Motets / Chansons | Manchicourt; Huelgas Ensemble, Paul Van Nevel | | 2 |
| 1998 | Virelais, Ballades, Caccia | Perusio; Huelgas Ensemble, Paul Van Nevel | | 2 |
| 1998 | La Pellegrina: Music for the Wedding of Ferdinando de' Medici and Christine de Lorraine, Princess of France, Florence 1589 | Huelgas Ensemble, Paul Van Nevel | | 1 |
| 1998 | La Favola di Orfeo (1494) | Poliziano, Bartolomeo Tromboncino, Filippo de Lurano,Marchetto Cara, Michele Pesenti,Serafino dall’Aquila; Huelgas Ensemble, Paul Van Nevel | | 1 |
| 1999 | A Secret Labyrinth | Alexander Agricola; Huelgas Ensemble, Paul Van Nevel | | 3 |
| 1999 | Lamentations de la Renaissance | Huelgas Ensemble, Paul Van Nevel | | 2 |
| 2000 | Musica Aldersoetste Konst | Paul Van Nevel | | 1 |
| 2000 | O gemma lux | Guillaume Dufay; Huelgas-Ensemble, Paul Van Nevel | | 3 |
| 2000 | Vêpres de Pentecoste | Christoph Demantius; Huelgas Ensemble, Paul Van Nevel | | 2 |
| 2001 | Le Chant de Virgile | Huelgas Ensemble, Paul Van Nevel | | 2 |
| 2001 | Messe à 24 voix | Annibale Padovano; Huelgas Ensemble, Paul Van Nevel | | 2 |
| 2001 | Psalmi Davidici qui poenitentiales nuncupantur | Andrea Gabrieli, Netherlands Chamber Choir, Paul Van Nevel, Huelgas-Ensemble | | 1 |
| 2002 | Requiem in Memoriam Josquin Desprez | Jean Richafort; Huelgas Ensemble, Paul Van Nevel | | 3 |
| 2002 | Missa Praeter rerum seriem | Cipriano de Rore; Huelgas Ensemble, Paul Van Nevel | | 2 |
| 2003 | La Spagna: 32 Contrapunti | Costanzo Festa; Huelgas Ensemble, Paul Van Nevel | | 2 |
| 2004 | Mirabile Mysterium: Christmas Music Throughout The Ages | Netherlands Chamber Choir, Paul Van Nevel | | 1 |
| 2005 | Da Pacem Domine | Jacobus de Kerle; Huelgas Ensemble, Paul Van Nevel | | 1 |
| 2005 | Psaume 103 / Motets & madrigaux | Alfonso Ferrabosco “Il padre”; Huelgas Ensemble, Paul Van Nevel | | 1 |
| 2007 | 40 Voices | Huelgas Ensemble, Paul Van Nevel | | 1 |
| 2007 | La Quinta essentia | Palestrina, Lassus, Ashewell; Huelgas-Ensemble, Paul Van Nevel | 4 | 2 |
| 2009 | La poesia cromatica | Michelangelo Rossi; Huelgas Ensemble, Paul Van Nevel | | 2 |
| 2010 | PraeBACHtorius | Johann Sebastian Bach, Michael Praetorius; Huelgas Ensemble, Paul Van Nevel | | 1 |
| 2012 | Jacob Clement | Jacob Clement; Huelgas Ensemble, Paul Van Nevel | | 2 |
| 2012 | The Eton Choirbook | Huelgas Ensemble, Paul Van Nevel | | 2 |
| 2014 | La oreja de Zurbarán | Huelgas Ensemble, Paul Van Nevel | | 2 |
| 2014 | The Treasures of Claude Le Jeune | Claude Le Jeune; Huelgas Ensemble, Paul Van Nevel | | 2 |
| 2014 | Mirabile Mysterium: A European Christmas Tale | Huelgas Ensemble, Paul Van Nevel | | 2 |
| 2015 | Et Lux | Wolfgang Rihm; Huelgas Ensemble, Minguet Quartett, Paul Van Nevel | | 2 |
| 2015 | L’héritage de Petrus Alamire | Huelgas Ensemble, Paul Van Nevel | | 2 |
| 2015 | Le mystère de “Malheur me bat” | Huelgas Ensemble, Paul Van Nevel | | 2 |
| 2016 | Twilight of the Middle Ages | Firminus Caron; Huelgas Ensemble, Paul Van Nevel | | 2 |
| 2016 | The Mirror of Claudio Monteverdi | Claudio Monteverdi; Huelgas Ensemble, Paul Van Nevel | | 2 |
| 2017 | The Ear of the Huguenots | Huelgas Ensemble, Paul Van Nevel | | 2 |
| 2018 | La liberazione di Ruggiero dall’isola d’Alcina | Francesca Caccini; Huelgas Ensemble, Paul Van Nevel | | 2 |
| 2018 | The music prints of Christophe Plantin | Palestrina, De la Hèle, Le Jeune, Pevernage, De Kerle, Philippe de Monte; Huelgas Ensemble, Paul Van Nevel | | 2 |
| 2018 | The Ear of Theodoor van Loon | Huelgas Ensemble, Paul Van Nevel | | 2 |
| 2019 | The Ear of Christopher Columbus | Huelgas Ensemble, Paul Van Nevel | | 2 |
| 2020 | Missa pro mortuis | Simone de Bonefont; Huelgas Ensemble, Paul Van Nevel | | 2 |
| 2020 | The Magic of Polyphony | Huelgas Ensemble, Paul Van Nevel | | 1 |
| 2021 | En Albion: Medieval Polyphony in England | Huelgas Ensemble; Paul Van Nevel | | 1 |
| 2022 | The Landscape of the Polyphonists | Huelgas Ensemble, Paul Van Nevel | | 1 |
| 2023 | Polyphonic Masses | Ludwig Daser; Huelgas Ensemble, Paul Van Nevel | | 2 |
