| 1994 | Les Grands Motets : In convertendo / Quam dilecta / Deus noster refugium | Rameau; Daneman, Rime, Agnew, Rivenq, Cavallier, Les Arts Florissants, William Christie | | 2 |
| 1995 | At Twilight: Chorale Music by Percy Grainger and Edvard Grieg | Percy Grainger, Edvard Grieg; Polyphony, Stephen Layton, David Wilson-Johnson, Paul Agnew | | 2 |
| 1995 | Krönungsmesse / Exsultate, jubilate / Ave verum corpus / Vesperae solennes de confessore | Mozart; Schlick, Von Magnus, Agnew, Mesdag, The Amsterdam Baroque Orchestra & Choir, Ton Koopman | | 1 |
| 1999 | L'Allegro, il Penseroso ed il Moderato | Handel; Susan Gritton, Claron McFadden, Lorna Anderson, Paul Agnew, Neal Davies, The King’s Consort, Robert King | | 1 |
| 1999 | Hero & Leander | Nicholas Lanier; Paul Agnew, Christopher Wilson | | 1 |
| 2001 | Irish, Welsh & Scottish Songs | Ludwig van Beethoven; Sophie Daneman, Paul Agnew, Peter Harvey, Alessandro Moccia, Alix Verzier, Jérôme Hantaï | | 2 |
| 2003 | Dido and Aeneas | Purcell; Susan Graham, Ian Bostridge, Camilla Tilling, Felicity Palmer, David Daniels, Cecile De Boever, Paul Agnew, European Voices, Le Concert d'Astrée, Emmanuelle Haïm | | 2 |
| 2004 | La Santissima Trinità | A Scarlatti; Fabio Biondi, Ensemble Europa Galante, Roberta Invernizzi, Véronique Gens, Vivica Genaux, Paul Agnew, Roberto Abbondanza | | 1 |
| 2005 | Salve Regina | André Campra, François Couperin; Paul Agnew, Anne-Marie Lasla, Les Arts Florissants, William Christie | | 1 |
| 2005 | Arie d’Opera | Vivaldi; Sandrine Piau, Ann Hallenberg, Paul Agnew, Guillemette Laurens, Modo Antiquo, Federico Maria Sardelli | | 2 |
| 2007 | Atenaide | Vivaldi; Modo Antiquo, Federico Maria Sardelli, Sandrine Piau, Vivica Genaux, Guillemette Laurens, Romina Basso, Nathalie Stutzmann, Paul Agnew, Stefano Ferrari | | 2 |
| 2009 | The Food of Love | Purcell; Paul Agnew, Anne-Marie Lasla, Elizabeth Kenny, Blandine Rannou | | 2 |
| 2011 | Lamentazione | Les Arts Florissants, Paul Agnew | | 1 |
| 2013 | Wie schön leuchtet der Morgenstern: Deutsche Weihnachtsmusik des 17. Jahrhunderts | Paul Agnew, Lautten Compagney & Dorothee Mields | | 1 |
| 2013 | Lachrimæ | John Dowland; Thomas Dunford, R. Hughes, R. van Mechelen, P. Agnew, A. Buet | | 3 |
| 2014 | Madrigali, vol. 2: Mantova | Claudio Monteverdi; Les Arts Florissants, Paul Agnew | | 1 |
| 2015 | Madrigali Vol.1: Cremona | Monteverdi; Les Arts Florissants, Paul Agnew | | 1 |
| 2017 | Madrigali, vol.3: Venezia | Monteverdi; Les Arts Florissants, Paul Agnew | | 1 |
| 2018 | Les Maîtres Du Motet | Sébastien de Brossard; Pierre Bouteiller; Les Arts Florissants, Paul Agnew | | 1 |
| 2019 | Madrigali: Libri primo & secondo | Gesualdo; Les Arts Florissants, Paul Agnew | | 2 |
| 2021 | Madrigali: Libri terzo & quarto | Gesualdo; Les Arts Florissants, Paul Agnew | | 2 |
| 2022 | The Great Venetian Mass | Vivaldi; Sophie Karthäuser, Lucile Richardot, Les Arts Florissants, Paul Agnew | | 1 |
| 2023 | Madrigali: Libri quinto & sesto | Gesualdo; Les Arts Florissants, Paul Agnew | | 2 |
| 2023 | Tenebræ Responsoria, Feria Quinta | Gesualdo; Les Arts Florissants, Paul Agnew | | 2 |
| 2023 | Italian Madrigals | Schütz; Les Arts Florissants, Paul Agnew | | 1 |
| 2024 | Early Cantatas | J S Bach; Les Arts Florissants, Paul Agnew, Benjamin Alard | | 1 |
