| 1994 | Messiah | George Frideric Handel; Barbara Schlick, Sandrine Piau, Andreas Scholl, Mark Padmore, Nathan Berg, Les Arts Florissants, William Christie | | 3 |
| 1994 | Cantatas with Violoncello Piccolo | Johann Sebastian Bach; Barbara Schlick, Andreas Scholl, Christoph Prégardien, Gotthold Schwarz, Das Leipziger Concerto Vocale, Ensemble Baroque de Limoges, Christophe Coin | | 10 |
| 1995 | L’Orfeo | Monteverdi; Concerto Vocale, René Jacobs, Laurence Dale, Efrat Ben-Nun, Larmore, Gerimon, Fink, Peeters, Scholl, Rivenq | | 1 |
| 1995 | Stabat Mater | Antonio Vivaldi; Andreas Scholl, Ensemble 415, Chiara Banchini | | 5 |
| 1995 | Deutsche Barocklieder | Andreas Scholl | | 2 |
| 1995 | L'Orfeo - Favola in Musica | Claudio Monteverdi, René Jacobs, Concerto Vocale, Laurence Dale, Bernarda Fink, Andreas Scholl, Nicolas Rivenq, Efrat Ben-Nun & Harry Peeters | | 1 |
| 1995 | Les Contre‐ténors | Pascal Bertin, Andreas Scholl, Dominique Visse | 4 | 2 |
| 1996 | English Folksongs & Lute Songs | Andreas Scholl feat. Andreas Martin | | 1 |
| 1996 | Vespro della beata Vergine | Monteverdi; M.C. Kiehr, B. Borden, A. Scholl, J. Bowen, V. Torres, A. Murgatroyd, A. Abete, J. Draijer, Nederlands Kamerkoor, Concerto Vocale, René Jacobs | | 1 |
| 1998 | Cantates pour alto | Johann Sebastian Bach; Andreas Scholl, Orchestre du Collegium Vocale, Philippe Herreweghe | | 4 |
| 1998 | Kantate: German Baroque Cantatas | Andreas Scholl, Concerto di Viole, Basel Consort | | 2 |
| 1999 | Heroes | Andreas Scholl | | 1 |
| 1999 | Ombra mai fù | G.F. Haendel; Andreas Scholl, Akademie für Alte Musik Berlin | | 1 |
| 1999 | Matthäus‐Passion | J.S. Bach; Collegium Vocale Gent, Philippe Herreweghe, Ian Bostridge, Franz-Josef Selig, Sibylla Rubens, Andreas Scholl, Werner Güra, Dietrich Henschel | 5 | 3 |
| 1999 | Stabat Mater / Salve Regina | Pergolesi; Andreas Scholl, Barbara Bonney, Christophe Rousset, Les Talens Lyriques | 4 | 2 |
| 2000 | Andreas Scholl: Vivaldi | Antonio Vivaldi; Andreas Scholl, Australian Brandenburg Orchestra, Paul Dyer | | 2 |
| 2001 | A Musicall Banquet | Andreas Scholl | | 1 |
| 2001 | Johannes-Passion - St John Passion - Passion selon Saint Jean | Johann Sebastian Bach; Sibylla Rubens, Andreas Scholl, Mark Padmore, Sebastian Noack, Michael Volle, Collegium Vocale Gent , Philippe Herreweghe | | 2 |
| 2001 | Wayfaring Stranger: Folksongs | Andreas Scholl with Orpheus Chamber Orchestra | 4 | 2 |
| 2001 | Maddalena ai piedi di Cristo | Antonio Caldara; Kiehr, Dominguez, Fink, Scholl, Türk, Schola Cantorum Basiliensis, René Jacobs | | 2 |
| 2004 | Saul | George Frideric Handel; Andreas Scholl, Neal Davies, Gabrieli Consort & Players, Paul McCreesh | | 2 |
| 2004 | Arcadia | Scarlatti, Marcello, Gasparini, Pasquini; Andreas Scholl, Accademia Bizantina, Ottavio Dantone | | 1 |
| 2005 | Arias for Senesino | Andreas Scholl, Accademia Bizantina, Ottavio Dantone | | 1 |
| 2007 | Andreas Scholl Goes Pop | Andreas Scholl & Orlando | | 1 |
| 2008 | Crystal Tears | Andreas Scholl | | 1 |
| 2009 | Ode for the Birthday of Queen Anne | George Frideric Handel; Guilmette, Scholl, Wolf, Vocalconsort Berlin, Akademie für Alte Musik Berlin, Marcus Creed | | 1 |
| 2010 | Songs of Myself | Oswald von Wolkenstein; Andreas Scholl, Shield of Harmony | | 1 |
| 2010 | O Solitude | Andreas Scholl | | 1 |
| 2011 | Bach Cantatas | Johann Sebastian Bach; Andreas Scholl, Kammerorchester Basel | | 2 |
| 2012 | Wanderer | Andreas Scholl, Tamar Halperin | | 4 |
| 2015 | Vavox Stabat Mater | Andreas Scholl + Vavox | | 1 |
| 2017 | Small Gifts | Johann Sebastian Bach; Andreas Scholl, Dorothee Oberlinger, Ensemble 1700 | | 1 |
| 2018 | The Family Songbook | Andreas Scholl & Tamar Halperin | | 1 |
| 2018 | The Family Songbook (Deluxe Version) | Andreas Scholl & Tamar Halperin | | 1 |
| 2019 | Twilight People | Andreas Scholl & Tamar Halperin | | 1 |
| 2021 | Canciones | Johann Sebastian Bach, Leo Brouwer; Andreas Scholl, Edin Karamazov | | 1 |
| 2022 | Stabat Mater | Arvo Pärt; Kurzak, Scholl, Alagna, Morphing Chamber Orchestra, Tomasz Wabnic | | 1 |
| 2023 | František Tůma | Andreas Scholl, Czech Ensemble Baroque & Roman Válek | | 1 |
