| 2003 | Ten Basque Melodies / Thus Sing the Children / An Adventure of Don Quixote | Jesús Guridi Bidaola; Isabel Álvarez, Chorus of the Conservatory of the Bilbao Choral Society, Bilbao Symphony Orchestra, Juan José Mena | | 1 |
| 2003 | Eight Basque Songs / In Memoriam / Spanish Fantasy | Jesús Arámbarri; Itxaro Mentxaka, Bilbao Symphony Orchestra, Juan José Mena | | 1 |
| 2004 | Symphony no. 2 / Suite no. 2 | Andrés Isasi; Bilbao Symphony Orchestra, Juan José Mena | | 1 |
| 2005 | Illeta | Francisco Escudero; Bilbao Symphony Orchestra, Juan José Mena, Coral Andra Mari, Ricardo Salaberria | | 1 |
| 2005 | Sinfonía pirenaica | Jesús Guridi; Bilbao Symphony Orchestra, Juan José Mena | | 1 |
| 2006 | El caserío | Jesús Guridi; Sardinero, Rodrigo, Sánchez, Bilbao Choral Society, Bilbao Symphony Orchestra, Juan José Mena | | 1 |
| 2010 | Piano Concerto / Divertissements sur un Thème Pastoral / Suites from “Ramuntcho” / Marche des petits soldats de plomb | Pierné; Jean-Efflam Bavouzet, BBC Philharmonic, Juanjo Mena | | 1 |
| 2012 | Nights in the Gardens of Spain / The Three-Cornered Hat / Homenajes | Manuel de Falla; Jean-Efflam Bavouzet, Raquel Lojendio, BBC Philharmonic, Juanjo Mena | | 1 |
| 2012 | Turangalîla-Symphonie | Messiaen; Steven Osborne, Cynthia Millar, Bergen Philharmonic Orchestra, Juanjo Mena | | 2 |
| 2012 | Simfonia de Rèquiem / Calidoscopi simfònic / Cinco Canciones Negras / Partita 1958 | Xavier Montsalvatge; Ruby Hughes, Clara Mouriz, BBC Philharmonic, Juanjo Mena | | 1 |
| 2012 | Symphonies nos. 1 and 2 / Bassoon Concerto / Invitation to the Dance | Carl Maria von Weber; BBC Philharmonic, Juanjo Mena, Karen Geoghegan | | 2 |
| 2013 | Danzas fantásticas | Turina; Clara Mouriz, BBC Philharmonic, Juanjo Mena | | 2 |
| 2014 | Canto a Sevilla | Turina; María Espada, Martin Roscoe, BBC Philharmonic, Juanjo Mena | | 1 |
| 2015 | Orchestral Works, Vol. 2 | Pierné; Jean-Efflam Bavouzet, BBC Philharmonic, Juanjo Mena | | 1 |
| 2015 | Orchestral Works 1: Estancia / Ollantay / Pampeana no. 3 | Ginastera; Lucas Somoza Osterc, BBC Philharmonic, Juanjo Mena | | 1 |
| 2016 | Piano Concerto no. 1 ‘Concierto fantástico’ / Suite española / Rapsodia española / Suite from ‘The Magic Opal’ | Albéniz; Martin Roscoe, BBC Philharmonic, Juanjo Mena | | 1 |
| 2016 | Orchestral Works 2: Piano Concerto no. 2 / Panambí | Ginastera; Xiayin Wang, Manchester Chamber Choir, BBC Philharmonic, Juanjo Mena | | 1 |
| 2017 | Piano Concerto "From Noon to Starry Night" / Aus Schwanengesang | Claude Baker; Marc-André Hamelin, Indianapolis Symphony Orchestra, Gilbert Varga, Juanjo Mena | | 1 |
| 2018 | Orchestral Works 3: Piano Concerto no. 1 / Concierto argentino / Variaciones concertantes | Ginastera; Xiayin Wang, BBC Philharmonic, Juanjo Mena | | 1 |
| 2019 | Overture to “Los esclavos felices” / Herminie / Symphony in D minor / Air from “Médée” / Overture in D major | Arriaga; Berit Norbakken Solset, BBC Philharmonic, Juanjo Mena | | 2 |
| 2021 | Percussion Concertos | HK Gruber; Colin Currie, Juanjo Mena, John Storgårds, BBC Philharmonic | | 1 |
| 2021 | Symphony no. 6 | Bruckner; BBC Philharmonic, Juanjo Mena | | 1 |
| 2024 | Cello Concerto ‘Ekaitza’ / Tres Sonetos De Michelangelo / Piano Concerto ‘Piscis’ | Gabriel Erkoreka; Asier Polo, Carlos Mena, Alfonso Gómez, Basque National Orchestra, Juanjo Mena | | 2 |
| 2024 | Don Quixote (complete ballet) / Suite from 'Alegrías' / Pedrelliana | Gerhard; BBC Philharmonic, Juanjo Mena | | 2 |
| 2025 | Lalo: Symphonie espagnole / Saint-Saëns: Violin Concerto no. 3 / Sarasate: Concert Fantasy on Bizet's "Carmen" | Lalo, Saint‐Saëns, Sarasate; James Ehnes, Juanjo Mena, BBC Philharmonic | | 1 |
