| 1961 | Pièces classiques pour deux pianos | Couperin / Clémenti / Mozart / Wilhelm F. Bach / Johann Christian Bach; Jacqueline Bonneau, Geneviève Joy | | 1 |
| 1975 | Flute, Flute, Violin & Viola | Johann Christian Bach, Wilhelm Friedemann Bach, Wilhelm Friedrich Ernst Bach; Jean‐Pierre Rampal, Eugenia Zukerman, Pinchas Zukerman, Charles Tunnell | | 1 |
| 1983 | Trio Sonatas | J.S. Bach, C.P.E. Bach, W.F. Bach, J.C.F. Bach; Jean-Pierre Rampal, Isaac Stern, Leslie Parnas, John Steele Ritter | | 2 |
| 1984 | The Complete Organ Music | Wilhelm Friedemann Bach; Leo van Doeselaar | | 1 |
| 1985 | Six duos pour deux flûtes | Wilhelm Friedemann Bach; Alain Marion & Emmanuel Pirard | | 1 |
| 1986 | Konzerte Für 2 Cembali | Carl Philipp Emanuel Bach, Wilhelm Friedemann Bach; Andreas Staier, Musica Antiqua Köln, Reinhard Goebel | | 1 |
| 1989 | Six Harpsichord Sonatas | Wilhelm Friedemann Bach; Anneke Uittenbosch | | 1 |
| 1990 | Œuvres pour clavecin | Wilhelm Friedemann Bach; Christophe Rousset | | 3 |
| 1991 | The Essential Harpsichord | Arne, JS Bach, Handel, WF Bach, Mozart, Paradies, Scarlatti, Couperin, Balbastre, Daquin, Duphly, Rameau; Virginia Black | | 1 |
| 1994 | Six Duets | Wilhelm Friedemann Bach; Wolfgang Schulz, Hansjörg Schellenberger | | 1 |
| 1995 | C. P. E. Bach: Sinfonias, Wq. 183, Nos. 1-4 / W. F. Bach: Sinfonia in F major | Carl Philipp Emanuel Bach / Wilhelm Friedemann Bach; Salzburg Chamber Philharmonic Orchestra, Yoon K. Lee | | 1 |
| 1995 | Concertos pour clavecin et cordes | Wilhelm Friedemann Bach; Richard Egarr, London Baroque & Charles Medlam | | 1 |
| 1996 | Concertos / Duets | J.S. Bach, W.F. Bach, C.P.E. Bach, J.C. Bach; Christopher Hogwood, Christophe Rousset | | 1 |
| 1996 | Double Concertos by Bach's Sons | Johann Christian Bach, Wilhelm Friedemann Bach, Carl Philipp Emanuel Bach; Leonhardt‐Consort, Concentus Musicus Wien | | 1 |
| 1997 | W. F. Bach: Sinfonias / Suite in G minor / Concerto for Harpsichord in D Major | Wilhelm Friedemann Bach;Charlotte Nediger,Tafelmusik,Jeanne Lamon | | 1 |
| 1997 | „a duoi cembali“ – Musique allemande pour deux clavecins | Mattheson, Schaffrath, W.F. Bach, Krebs; Attilio Cremonesi, Alessandro de Marchi | | 1 |
| 1997 | Polonaises & Fantasies | Harald Hoeren, Wilhelm Friedemann Bach | | 1 |
| 1997 | Sonatas for Harpsichord | Wilhelm Friedemann Bach; Charlotte Mattax | | 1 |
| 1998 | Puyana Plays Bach | Johann Sebastian Bach, Johann Christoph Bach, Wilhelm Friedemann Bach; Rafael Puyana | | 1 |
| 2000 | 12 Polonaises | W.F. Bach; Christophe Rousset | | 1 |
| 2000 | Six Duets For Two Flutes | Wilhelm Friedemann Bach; Barthold Kuijken, Marc Hantai | | 1 |
| 2002 | Symphonies / Concerto pour clavecin (Akademie für Alte Musik Berlin feat. clavecin: Raphael Alpermann) | Wilhelm Friedemann Bach | | 1 |
| 2002 | Wilhelm Friedemann Bach: Concerti | Wilhelm Friedemann Bach; Freiburger Barockorchester | | 1 |
| 2004 | Sonates en Trio | Jean-Sebastien Bach, Carl Philipp Emanuel Bach, Wilhelm Friedemann Bach; Valérie Balssa, Jean-Pierre Pinet | | 1 |
| 2005 | Bach & Silbermann | Johann Sebastian Bach, Wilhelm Friedemann Bach, Carl Philipp Emanuel Bach; Gerald Hambitzer | | 1 |
| 2006 | Wilhelm Friedemann Bach: Sonatas & Trios, Camerata Köln | Wilhelm Friedemann Bach; Camerata Köln | | 1 |
| 2009 | Fantaisies - Sonates - Fugues - Polonaises | Wilhelm Friedemann Bach; Maude Gratton | | 1 |
| 2010 | Harpsichord Concertos (Complete) | Wilhelm Friedemann Bach; Harmonices Mundi, Claudio Astronio | | 1 |
| 2010 | Complete Organ Works | Wilhelm Friedemann Bach; Friedhelm Flamme | | 1 |
| 2011 | Organ Works: Fugues / Chorale Preludes | Wilhelm Friedemann Bach; Julia Brown | | 2 |
| 2015 | Concertos pour clavecin et cordes | Wilhelm Friedemann Bach; Il Convito & Maude Gratton | | 1 |
| 2016 | Three Fantasias, Three Fugues, Three Sonatas | Wilhelm Friedemann Bach; Anthony Spiri | | 1 |
| 2017 | Dynastie: Bach Concertos | Johann Sebastian Bach, Johann Christian Bach, Wilhelm Friedemann Bach, Carl Philipp Emanuel Bach & Jean Rondeau | | 2 |
| 2017 | Complete Harpsichord Music | Wilhelm Friedemann Bach; Claudio Astronio | | 2 |
| 2017 | Complete Organ Music | Wilhelm Friedemann Bach; Filippo Turri | | 2 |
| 2018 | Wilhelm Friedemann Bach Edition | Wilhelm Friedemann Bach | | 1 |
| 2018 | Trios for Oboe, Bassoon & Piano | Joseph Haydn, Wilhelm Friedemann Bach, Carl Philipp Emanuel Bach; Sergio Azzolini, Maurice Bourgue, Kimiko Imani | | 1 |
| 2020 | Bach Sons | Johann Christoph Friedrich, Carl Philipp Emanuel, Wilhelm Friedemann, Johann Christian; Controcorrente Orchestra | | 1 |
| 2025 | The Age of Extremes | W.F. Bach, C.P.E. Bach, G. Benda; Francesco Corti, Il Pomo d’Oro | | 1 |
| — | Cembalo Konzerte - Sinfonia | Wilhelm Friedemann Bach, Guy Penson, Ricercar Consort | | 1 |
| — | Fugues & Sonatas | Wilhelm Friedemann Bach; Ewald Demeyere | | 1 |
| — | Geistliche Musik der Bach Familie, vol 4 | Wilhelm Friedemann Bach, Johann Ludwig Bach; Rheinische Kantorei, Das Kleine Konzert, Hermann Max | | 1 |
