| 2008 | Orchestral Works 1: La Mer / Prélude à l'après-midi d'un faune | Debussy; Orchestre National de Lyon, Jun Märkl | | 1 |
| 2008 | Orchestral Works 2: Nocturnes / Clair de lune / Pelléas et Mélisande Symphonie | Debussy; Orchestre National de Lyon, Jun Märkl | | 1 |
| 2009 | Daphnis et Chloé | Maurice Ravel; MDR Rundfunkchor, Orchestre De Lyon, Jun Märkl | | 1 |
| 2009 | Poèmes pour Mi / Les offrandes oubliees / Un sourire | Messiaen; Anne Schwanewilms, Orchestre National de Lyon, Jun Märkl | | 1 |
| 2010 | Orchestral Works 3: Images | Debussy; Orchestre National de Lyon, Jun Märkl | | 1 |
| 2010 | Orchestral Works 4: Le Martyre de Saint Sébastien / Khamma | Debussy; Orchestre National de Lyon, Jun Märkl | | 1 |
| 2010 | Elias | Mendelssohn; Ruth Ziesak, Claudia Mahnke, Christoph Genz, Ralf Lukas, MDR Radio Choir, MDR Symphony Orchestra, Jun Märkl | | 1 |
| 2010 | Symphony No. 2, "Lobgesang" | Mendelssohn; Ruth Ziesak, Mojca Erdmann, Christian Elsner, MDR Radio Choir, MDR Symphony Orchestra, Jun Märkl | | 1 |
| 2011 | Orchestral Works 5: La boîte à joujoux / Estampes nos. 1 and 2 / L’isle joyeuse / Six épigraphes antiques | Debussy; Orchestre National de Lyon, Jun Märkl | | 1 |
| 2011 | Orchestral Works 6: Suite bergamasque / Petite Suite / En blanc et noir / Printemps / Symphony in B minor | Debussy; Orchestre National de Lyon, Jun Märkl | | 1 |
| 2011 | Orchestral Works 7: Fantaisie for Piano and Orchestra / Deux danses / Rhapsodies for Clarinet and Saxophone | Debussy; Jean‐Yves Thibaudet, Emmanuel Ceysson, Alexandre Doisy, Paul Meyer, Orchestre National de Lyon, Jun Märkl | | 1 |
| 2011 | Les Nuits hallucinées | Thierry Escaich; Thierry Escaich, Nora Gubisch, David Grimal, Orchestre National de Lyon, Jun Märkl, Christian Arming | | 1 |
| 2012 | Et exspecto resurrectionem mortuorum / Le tombeau resplendissant / Hymne | Messiaen; Orchestre National de Lyon, Jun Märkl | | 1 |
| 2012 | 24 Préludes | Claude Debussy, Peter Breiner; Royal Scottish National Orchestra, Jun Märkl | | 1 |
| 2012 | Cello Concerto | Antonín Dvořák; Indianapolis Symphony Orchestra, Jun Märkl, Zuill Bailey | | 1 |
| 2013 | Symphony in F Major / Symphonic Prelude to Tiefland | Eugen d’Albert; MDR Symphony Orchestra, Jun Märkl | | 1 |
| 2014 | Orchestral Works • 1 | Toshio Hosokawa; Stefan Dohr, Momo Kodama, Anssi Karttunen, Royal Scottish National Orchestra, Jun Märkl | | 1 |
| 2014 | Aschenputtel (Cinderella) Suite | Eugen d’Albert; Viktorija Kaminskaite, MDR Leipzig Radio Symphony Orchestra, Jun Märkl | | 1 |
| 2014 | Orchestral Works • 2 | Toshio Hosokawa; Royal Scottish National Orchestra, Orchestre National de Lyon, Jun Märkl | | 1 |
| 2014 | Piano Concertos | Frédéric Chopin; Ingrid Fliter, Scottish Chamber Orchestra, Jun Märkl | | 1 |
| 2015 | Nico Muhly: Cello Concerto / Ernest Bloch: Schelomo: Hebraic Rhapsody for Cello and Orchestra / Three Jewish Poems | Nico Muhly, Ernest Bloch; Zuill Bailey, Jun Märkl, Indianapolis Symphony Orchestra | | 1 |
| 2017 | Symphony in C major / Symphony in E major (fragments) | Richard Wagner; MDR Leipzig Radio Symphony Orchestra, Jun Märkl | | 1 |
| 2017 | Concert Overtures | Richard Wagner; MDR Leipzig Radio Symphony Orchestra, Jun Märkl | | 1 |
| 2017 | Symphonic Poems | Saint‐Saëns; Orchestre National de Lille, Jun Märkl | | 2 |
| 2018 | Orchestral Works | Saint‐Saëns; Guillermo Pastrana, Basque National Orchestra, Jun Märkl | | 1 |
| 2018 | Orchestral Works • 3 | Toshio Hosokawa; Susanne Elmark, Ilse Eerens, Mihoko Fujimura, Tadashi Tajima, Basque National Orchestra, Jun Märkl | | 1 |
| 2019 | Opera Overtures | Lortzing; Malmö Opera Orchestra, Jun Märkl | | 1 |
| 2019 | Ascanio - Ballet | Saint-Saëns; Malmö Symphony Orchestra, Jun Märkl | | 2 |
| 2020 | Tanzsuite / Divertimento, Op. 86 | Richard Strauss; New Zealand Symphony Orchestra, Jun Märkl | | 1 |
| 2021 | Music for Wind Ensemble: Samson et Dalila / Orient et Occident / Marche héroîque | Saint-Saëns; Band of the RAF College, Jun Märkl | | 1 |
| 2021 | Violin Concertos nos. 1 and 2 / Sonata for Solo Violin | Prokofiev; Tianwa Yang, ORF Vienna Radio Symphony Orchestra, Jun Märkl | | 1 |
| 2021 | Bilder einer Ausstellung | Modest Mussorgski; Jun Märkl, Tonkünstler-Orchester Niederösterreich | | 1 |
| 2022 | Dances And Ballet Music | Saint-Saëns; Residentie Orkest The Hague, Jun Märkl | | 1 |
| 2024 | Orchestral Works • 4 | Toshio Hosokawa; Jeroen Berwaerts, Paul Huang, Residentie Orkest, The Hague, Jun Märkl | | 1 |
