| 1996 | A Flock Descends | Toru Takemitsu; Paul Watkins, BBC National Orchestra of Wales, Tadaaki Otaka | 4 | 1 |
| 2003 | Suites for Solo Cello | Benjamin Britten; Paul Watkins | | 1 |
| 2004 | Violin Concertos | Berg, Britten; Daniel Hope, BBC Symphony Orchestra, Paul Watkins | | 1 |
| 2007 | Complete Cello Concertos | Julius Röntgen; Arturo Muruzabal, Paul Watkins, Henrik Schaefer | | 1 |
| 2008 | Symphony No. 1 / Cello Concerto | Cyril Scott; Martyn Brabbins, Paul Watkins, BBC Philharmonic | | 1 |
| 2010 | Orchestral Works 2 | Dallapiccola; Gillian Keith, Paul Watkins, BBC Philharmonic, Gianandrea Noseda | | 1 |
| 2010 | Cello Sonatas nos. 1, 2 and 3 | Martinů; Paul Watkins, Huw Watkins | | 2 |
| 2011 | Cello Symphony / Symphonic Suite from "Gloriana" / Four Sea Interludes from "Peter Grimes" | Benjamin Britten; BBC Philharmonic, Edward Gardner, Paul Watkins | | 1 |
| 2011 | Orchestral Works, Volume 2: Variations on a Hungarian Peasant Song / The Vintner's Daughter / Notturno Ungherese / Cello Concerto | Miklós Rózsa; Jennifer Pike, Paul Watkins, BBC Philharmonic, Rumon Gamba | | 1 |
| 2011 | Double Concerto / Violin Concerto / Cello Concerto | Frederick Delius; Tasmin Little, Paul Watkins, BBC Symphony Orchestra, Sir Andrew Davis | | 1 |
| 2011 | Works for Cello and Piano | Mendelssohn; Paul Watkins, Huw Watkins | | 2 |
| 2012 | Cello Concerto | Elgar; Paul Watkins, BBC Philharmonic, Sir Andrew Davis | | 1 |
| 2012 | British Works for Cello and Piano, Volume 1 | Parry, Delius, Bantock, Foulds; Paul Watkins, Huw Watkins | | 2 |
| 2012 | Orchestral Works 3: Symphony no. 2 / Grave / Cello Concerto / Mala suita | Witold Lutosławski; Paul Watkins, BBC Symphony Orchestra, Edward Gardner | | 1 |
| 2013 | British Works for Cello and Piano, Volume 2 | Ireland, Bax, Bowen; Paul Watkins, Huw Watkins | | 2 |
| 2014 | British Works for Cello and Piano, Volume 3 | Moeran, Rubbra, Rawsthorne; Paul Watkins, Huw Watkins | | 2 |
| 2014 | Brahms: Cello Sonatas & Clarinet Trio | Johannes Brahms; Ian Brown, Paul Watkins, Michael Collins | | 1 |
| 2015 | Symphony no. 2 / Cello Concerto / Improvisations on an Impromptu of Benjamin Britten | Walton; Paul Watkins, BBC Symphony Orchestra, Edward Gardner | | 2 |
| 2015 | British Works for Cello and Piano, Volume 4 | Lutyens, Hoddinott, Leighton, Bennett; Paul Watkins, Huw Watkins | | 2 |
| 2015 | American Works for Cello and Piano | Copland, Bernstein, Crumb, Carter, Barber; Paul Watkins, Huw Watkins | | 2 |
| 2018 | Cello Concerto / Eclogue / New Year Music / Grand Fantasia and Toccata | Finzi; Paul Watkins, Louis Lortie, BBC Symphony Orchestra, Sir Andrew Davis | | 1 |
| 2023 | BBC Music, Volume 31, Number 11: The Best of British | Benjamin Britten, George Butterworth, Gerald Finzi, Errollyn Wallen; Paul Watkins, Martyn Brabbins, Donald Runnicles, John Wilson, BBC Scottish Symphony Orchestra | | 1 |
